DataSuds

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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

Comment publier un jeu de données (dataset) dans DataSuds ?
→ Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection. → Mode d'emploi

UMI TransVIHMI

UMR CEREGE

UMR ESPACE-DEV

UMR PHIM

UMR DIADE

Base cartographique Sphaera

Partnerships

UMR iEES-Paris

UMR AMAP

UMR HydroSciences Montpellier

UMR Entropie

UMR MIO

UMR MoISA

UMR MIVEGEC

UMR GET

UMI SOURCE

UMR EGCE

UMR Eco&Sols

UMR INTERTRYP

UMR QualiSud

UMR LEMAR

UMR LEDa

UMR PHARMADEV

UMR CBGP

UMR PALOC

UMR MERIT

UMI UMMISCO

UMR SENS

UMR Ceped

UMR IGE

UMR LMV

UMR MARBEC

UMR G-EAU

UMR Geoazur

LMI CARIBACT

Mission pour la Science Ouverte (MSO)

LMI PathoBios

Data collected as part of M-TROPICS based research projects

Rain Cell projects

AMMA-CATCH associated projects

Paddle project

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4,251 to 4,260 of 9,038 Results

RainCell_Bamako20190516_overbank.txt Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 106.6 MB - MD5: 915ca27b5fa2333d7749ff66ce5f8e92 Data Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999
Raw data for: Genome-Wide Association study of non-severe malaria in two birth cohorts in Benin Mar 5, 2021 - UMR MERIT Jacqueline Milet; Anne Boland; Pierre Luisi; Ibrahim Sadissou; Paulin Sonon; Nadia Domingo; Laure Gineau; Friso Palstra; Hervé Perdry; Achille Massougbodji; Jean-François Deleuze; David Courtin; Audrey Sabbagh; André Garcia, 2019, "Raw data for: Genome-Wide Association study of non-severe malaria in two birth cohorts in Benin", https://doi.org/10.23708/EXSQTM, DataSuds, V2 Whole-genome genotyping data for two cohorts of infants followed for malaria infections in south Benin : 525 infants from Tori-Bossito and 275 infants from Allada. Genotyping was performed on Illumina HumanOmni5-4v1 chips. Standard control steps and criteria (Anderson et al. 2010...
Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali Mar 5, 2021 - Rain Cell project in Mali Dembele, N'dji Dit Jacques, 2021, "Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali", https://doi.org/10.23708/CL3VFS, DataSuds, V1 On May 16 2019, an intense rainfall event led to devastating floods in Bamako, Mali. In the immediate aftermath of the flood event, the Laboratoire Hommes-Peuplements–Environments (Labo-HoPE research laboratory) collected data about the flooding process and mechanism as well as t...
RainCell_Bamako20190516_Map_REX.pdf Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali Adobe PDF - 2.8 MB - MD5: 48e52c57dee79a47a9e98f67e5033f41 Data Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).
PHIM_ xisRNA_ancillaryInputData.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 5.0 MB - MD5: 8f147c6903729a14cfa76cb3237d17c6 Data Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.
PHIM_ xisRNA_coveragePlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 31.9 MB - MD5: 72245fe84113b55b54efa77c44c87308 Plot Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.
PHIM_ xisRNA_domainsPlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 944.3 KB - MD5: bd5265d4a84d85a6bc13f363e8f5cb1f Plot Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_iprScan.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 1.8 MB - MD5: 5350dacb2c14b070cd1cac19066692b4 Data Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Plain Text - 46.4 KB - MD5: e5a17d624409c0fd6ecce49ba7f7ab0a Data Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...
PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.0 KB - MD5: e4c59802a37fb02dc0e4ac16e26bdfbb Documentation Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.

RainCell_Bamako20190516_overbank.txt

Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 106.6 MB -

Data

Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999

Raw data for: Genome-Wide Association study of non-severe malaria in two birth cohorts in Benin

Mar 5, 2021 - UMR MERIT

Jacqueline Milet; Anne Boland; Pierre Luisi; Ibrahim Sadissou; Paulin Sonon; Nadia Domingo; Laure Gineau; Friso Palstra; Hervé Perdry; Achille Massougbodji; Jean-François Deleuze; David Courtin; Audrey Sabbagh; André Garcia, 2019, "Raw data for: Genome-Wide Association study of non-severe malaria in two birth cohorts in Benin", https://doi.org/10.23708/EXSQTM, DataSuds, V2

Whole-genome genotyping data for two cohorts of infants followed for malaria infections in south Benin : 525 infants from Tori-Bossito and 275 infants from Allada. Genotyping was performed on Illumina HumanOmni5-4v1 chips. Standard control steps and criteria (Anderson et al. 2010...

Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali

Mar 5, 2021 - Rain Cell project in Mali

Dembele, N'dji Dit Jacques, 2021, "Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali", https://doi.org/10.23708/CL3VFS, DataSuds, V1

On May 16 2019, an intense rainfall event led to devastating floods in Bamako, Mali. In the immediate aftermath of the flood event, the Laboratoire Hommes-Peuplements–Environments (Labo-HoPE research laboratory) collected data about the flooding process and mechanism as well as t...

RainCell_Bamako20190516_Map_REX.pdf

Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali

Adobe PDF - 2.8 MB -

Data

Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).

PHIM_ xisRNA_ancillaryInputData.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 5.0 MB -

Data

Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.

PHIM_ xisRNA_coveragePlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 31.9 MB -

Plot

Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.

PHIM_ xisRNA_domainsPlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 944.3 KB -

Plot

Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_iprScan.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 1.8 MB -

Data

Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Plain Text - 46.4 KB -

Data

Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...

PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.0 KB -

Documentation

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.

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