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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

 Comment publier un jeu de données (dataset) dans DataSuds ?
          → Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection.    → Mode d'emploi
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41 to 50 of 8,343 Results
compile2.py
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Python Source Code - 3.7 KB - MD5: d35404f2eff0237f1839c10fdfeac401
Code
Script for summarising for each taxonomic assignment
Viroseek_downstream_analysis2.0.Rmd
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
R Notebook - 84.3 KB - MD5: 4223f5eada029a205c9b71ebccf8d192
Code
Rmarkdown for downstream analysis
nextflow.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 5.1 KB - MD5: cc93bbd9ed8fb4dac49680bf3e72b6fd
Code
Configuration file for ViroSeek Nextflow execution.
ViroSeek.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 19.0 KB - MD5: bb066b58a76dc650fbac505c952367ea
Code
Nextflow pipeline script for ViroSeek.
ViroSeek_installation.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.3 KB - MD5: f5897ee7f60af645bc78c137f81219c2
Documentation
Installation instructions for ViroSeek.
ViroSeek_use.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 5.2 KB - MD5: c866404f09f72947138f19eac6522732
Documentation
Tutorial for running ViroSeek pipeline.
hpc.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.3 KB - MD5: 24cc5d0534a6ce794c1db131d587084d
Code
config file for ViroSeek
local.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.4 KB - MD5: d508e27df6f8d6455c5d58541b5ea4cb
Code
config file for ViroSeek
softwares.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.3 KB - MD5: d11ae45cec6111c0c66f0d5fc2fd792e
Code
config file for ViroSeek
bash.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 2.5 KB - MD5: b649eebd4f6c95ac03d00216f350fb10
Code
Modules for ViroSeek
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