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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

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          → Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection.    → Mode d'emploi
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41 to 50 of 9,708 Results
windows_analysis.py
Jul 30, 2026 - GranPa source code, v1
Python Source Code - 10.3 KB - MD5: a869705ba1bfcc4876e9e72bb4d59149
generate_ref.py
Jul 30, 2026 - GranPa source code, v1
Python Source Code - 1.7 KB - MD5: 960b8d6cff21f335883295b493e5f8f2
granpa_simu.py
Jul 30, 2026 - GranPa source code, v1
Python Source Code - 4.0 KB - MD5: 2961b13fa88633a84a8a89ec77dde633
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Jul 28, 2026 - UMR MIVEGEC
Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V2, UNF:6:6xWLtYNtB6mlWqJirEWO9w== [fileUNF]
This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...
ReadMe.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.0 KB - MD5: f7a1adcb8164f01c0df6bdd70a6915e5
Documentation
contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
Viralmetagenome.sh
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 308 B - MD5: 4df3fc615e6542de1cab355a3c856fd2
Code
Viralmetagenome command script.
Viralmetagenome_input.tab
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 658 B - 3 Variables, 5 Observations - UNF:6:jTmqDDNM4j3t0aAGiilaCA==
Données
Viralmetagenome samples input file, companion file of Viralmetagenome.sh.
compile2.py
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Python Source Code - 3.7 KB - MD5: d35404f2eff0237f1839c10fdfeac401
Code
Script for summarising for each taxonomic assignment
Viroseek_downstream_analysis2.0.Rmd
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
R Notebook - 84.3 KB - MD5: 4223f5eada029a205c9b71ebccf8d192
Code
Rmarkdown for downstream analysis
nextflow.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 5.1 KB - MD5: cc93bbd9ed8fb4dac49680bf3e72b6fd
Code
Configuration file for ViroSeek Nextflow execution.
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