DataSuds

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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

Comment publier un jeu de données (dataset) dans DataSuds ?
→ Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection. → Mode d'emploi

UMI TransVIHMI

UMR CEREGE

UMR ESPACE-DEV

UMR PHIM

UMR DIADE

Base cartographique Sphaera

Partnerships

UMR iEES-Paris

UMR AMAP

UMR HydroSciences Montpellier

UMR Entropie

UMR MIO

UMR MoISA

UMR MIVEGEC

UMR GET

UMI SOURCE

UMR EGCE

UMR Eco&Sols

UMR INTERTRYP

UMR QualiSud

UMR LEMAR

UMR LEDa

UMR PHARMADEV

UMR CBGP

UMR PALOC

UMR MERIT

UMI UMMISCO

UMR SENS

UMR Ceped

UMR IGE

UMR LMV

UMR MARBEC

UMR G-EAU

UMR Geoazur

LMI CARIBACT

Mission pour la Science Ouverte (MSO)

LMI PathoBios

Data collected as part of M-TROPICS based research projects

Rain Cell projects

AMMA-CATCH associated projects

Paddle project

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7,481 to 7,490 of 9,105 Results

Dataset from an in-field experimental rainfall simulation - Influence of macrofauna on runoff and erosion - Vietnam, Hanoi Province, Dong Cao, March 2011 Sep 23, 2020 - UMR iEES-Paris Janeau, J.-L.; Jouquet, P.; Pisano, A.; Tran Si Hai; Orange, D.; Luu Thi Nguyet Minh; Valentin, C., 2020, "Dataset from an in-field experimental rainfall simulation - Influence of macrofauna on runoff and erosion - Vietnam, Hanoi Province, Dong Cao, March 2011", https://doi.org/10.23708/KP9KBW, DataSuds, V1, UNF:6:pfNxEbAktmu+jFiGn1l9/w== [fileUNF] We assessed the effect of the micro-relief generated by earthworms and termites on soil hydrodynamic properties, and soil and nutrient losses. Eighteen 1 m×1 m plots were established for rainfall simulation experiments (2 runs of 40 min rain, intensity 90 mm h−1) in a steep slope...
Dong Cao Rainfall simulation - macrofauna - hydrodynamic - soil loss- March 2011.tab Sep 23, 2020 - Dataset from an in-field experimental rainfall simulation - Influence of macrofauna on runoff and erosion - Vietnam, Hanoi Province, Dong Cao, March 2011 Tabular Data - 3.1 KB - 13 Variables, 39 Observations - UNF:6:pfNxEbAktmu+jFiGn1l9/w== Dong Cao Rainfall simulation - macrofauna - hydrodynamic - soil loss- March 2011
Dataset from an in-field experimental rainfall simulation and aquatic mesocosm - Vietnam, Hanoi Province, Dong Cao and Cua Khau Lake, 2012 Sep 23, 2020 - UMR iEES-Paris Huong T. Le; Cuong T. Ho; Quan H. Trinh; Duc A. Trinh; Minh T. N. Luu; Hai S. Tran; Orange, D.; Janeau, J.-L.; Merroune, A.; Rochelle-Newall, E.; Pommier, T., 2020, "Dataset from an in-field experimental rainfall simulation and aquatic mesocosm - Vietnam, Hanoi Province, Dong Cao and Cua Khau Lake, 2012", https://doi.org/10.23708/SVHIUC, DataSuds, V1, UNF:6:PLsbMub7iE/vkMMtCIpyLw== [fileUNF] In North Vietnam, we focused on understanding the effects of DOC runoff from soils amended with compost, vermicompost, or biochar on the aquatic microbial community of a tropical reservoir. Runoff collected from a series of rainfall simulations on soils amended with different org...
Dong Cao Rainfall Simulation and Mesocosm - April 2012.tab Sep 23, 2020 - Dataset from an in-field experimental rainfall simulation and aquatic mesocosm - Vietnam, Hanoi Province, Dong Cao and Cua Khau Lake, 2012 Tabular Data - 1.5 KB - 13 Variables, 21 Observations - UNF:6:PLsbMub7iE/vkMMtCIpyLw== Dong Cao Rainfall Simulation and Mesocosm - April 2012
Racine 2.2 Sep 18, 2020 - CERES Team Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2", https://doi.org/10.23708/CKRDBW, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF] RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...
Racine2_2_V10.xlsm Sep 18, 2020 - Racine 2.2 MS Excel Spreadsheet - 5.0 MB - MD5: 8012ce30b4ca5df89866f219664916cc Code Application (runs in MS.Excel)
Divergence_time_beast.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 852 B - MD5: 3da14ba7c072d5b354c04f98edba3cc8 Code Bash script used to infer the chronogram with BEAST software. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
Divergence_time_beast.xml Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum XML - 1.1 MB - MD5: 123ff8c0bc59283a8a6364798a24e81c Data Input file used in the script Divergence_time_beast.sh which uses BEAST software to infer the chronogram (divergence time estimates). This file was created with BEAUti program of BEAST. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
jmodeltest.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 826 B - MD5: 083b0144bee47b1ffbc55d8aa77b23e6 Code Bash script used to run JmodelTest2 to infer the best substitution model. The results generated by JmodelTest2 were subsequently used in the phylogenetic reconstruction, the skyline plot and the inference of the chronogram. More information is provided in Ben Chehida et al. (2020...
Mitobim.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 1.4 KB - MD5: db521dc52342ba5bb7328c4d44aaf39b Code Bash script used to assemble mitogenomes from MiSeq 100PE reads using MITOBIM. It generates a fasta file for each individual assembled. More information is provided in Text S2 in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

Dataset from an in-field experimental rainfall simulation - Influence of macrofauna on runoff and erosion - Vietnam, Hanoi Province, Dong Cao, March 2011

Sep 23, 2020 - UMR iEES-Paris

Janeau, J.-L.; Jouquet, P.; Pisano, A.; Tran Si Hai; Orange, D.; Luu Thi Nguyet Minh; Valentin, C., 2020, "Dataset from an in-field experimental rainfall simulation - Influence of macrofauna on runoff and erosion - Vietnam, Hanoi Province, Dong Cao, March 2011", https://doi.org/10.23708/KP9KBW, DataSuds, V1, UNF:6:pfNxEbAktmu+jFiGn1l9/w== [fileUNF]

We assessed the effect of the micro-relief generated by earthworms and termites on soil hydrodynamic properties, and soil and nutrient losses. Eighteen 1 m×1 m plots were established for rainfall simulation experiments (2 runs of 40 min rain, intensity 90 mm h−1) in a steep slope...

Dong Cao Rainfall simulation - macrofauna - hydrodynamic - soil loss- March 2011.tab

Sep 23, 2020 - Dataset from an in-field experimental rainfall simulation - Influence of macrofauna on runoff and erosion - Vietnam, Hanoi Province, Dong Cao, March 2011

Tabular Data - 3.1 KB - 13 Variables, 39 Observations -

Dong Cao Rainfall simulation - macrofauna - hydrodynamic - soil loss- March 2011

Dataset from an in-field experimental rainfall simulation and aquatic mesocosm - Vietnam, Hanoi Province, Dong Cao and Cua Khau Lake, 2012

Sep 23, 2020 - UMR iEES-Paris

Huong T. Le; Cuong T. Ho; Quan H. Trinh; Duc A. Trinh; Minh T. N. Luu; Hai S. Tran; Orange, D.; Janeau, J.-L.; Merroune, A.; Rochelle-Newall, E.; Pommier, T., 2020, "Dataset from an in-field experimental rainfall simulation and aquatic mesocosm - Vietnam, Hanoi Province, Dong Cao and Cua Khau Lake, 2012", https://doi.org/10.23708/SVHIUC, DataSuds, V1, UNF:6:PLsbMub7iE/vkMMtCIpyLw== [fileUNF]

In North Vietnam, we focused on understanding the effects of DOC runoff from soils amended with compost, vermicompost, or biochar on the aquatic microbial community of a tropical reservoir. Runoff collected from a series of rainfall simulations on soils amended with different org...

Dong Cao Rainfall Simulation and Mesocosm - April 2012.tab

Sep 23, 2020 - Dataset from an in-field experimental rainfall simulation and aquatic mesocosm - Vietnam, Hanoi Province, Dong Cao and Cua Khau Lake, 2012

Tabular Data - 1.5 KB - 13 Variables, 21 Observations -

Dong Cao Rainfall Simulation and Mesocosm - April 2012

Racine 2.2

Sep 18, 2020 - CERES Team

Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2", https://doi.org/10.23708/CKRDBW, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF]

RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...

Racine2_2_V10.xlsm

Sep 18, 2020 - Racine 2.2

MS Excel Spreadsheet - 5.0 MB -

Code

Application (runs in MS.Excel)

Divergence_time_beast.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 852 B -

Code

Bash script used to infer the chronogram with BEAST software. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

Divergence_time_beast.xml

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

XML - 1.1 MB -

Data

Input file used in the script Divergence_time_beast.sh which uses BEAST software to infer the chronogram (divergence time estimates). This file was created with BEAUti program of BEAST. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

jmodeltest.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 826 B -

Code

Bash script used to run JmodelTest2 to infer the best substitution model. The results generated by JmodelTest2 were subsequently used in the phylogenetic reconstruction, the skyline plot and the inference of the chronogram. More information is provided in Ben Chehida et al. (2020...

Mitobim.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 1.4 KB -

Code

Bash script used to assemble mitogenomes from MiSeq 100PE reads using MITOBIM. It generates a fasta file for each individual assembled. More information is provided in Text S2 in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

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