DataSuds

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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

Comment publier un jeu de données (dataset) dans DataSuds ?
→ Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection. → Mode d'emploi

UMR MIVEGEC

UMR DIADE

UMR LEMAR

UMR LISAH

UMR ESPACE-DEV

UMR PHIM

UMI TransVIHMI

UMR CEREGE

Base cartographique Sphaera

UMR iEES-Paris

UMR AMAP

UMR HydroSciences Montpellier

UMR Entropie

UMR MIO

UMR MoISA

UMR GET

UMI SOURCE

UMR EGCE

UMR Eco&Sols

UMR INTERTRYP

UMR QualiSud

Partnerships

UMR LEDa

UMR PHARMADEV

UMR CBGP

UMR PALOC

UMR MERIT

UMI UMMISCO

UMR SENS

UMR Ceped

UMR IGE

UMR LMV

UMR MARBEC

UMR G-EAU

UMR Geoazur

LMI CARIBACT

Mission pour la Science Ouverte (MSO)

LMI PathoBios

Data collected as part of M-TROPICS based research projects

Rain Cell projects

AMMA-CATCH associated projects

Paddle project

UMR LEGOS

UMR CRBE

LMI CARE

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8,451 to 8,460 of 10,125 Results

Racine 2.2 Sep 18, 2020 - CERES Team Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2", https://doi.org/10.23708/CKRDBW, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF] RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...
Racine2_2_V10.xlsm Sep 18, 2020 - Racine 2.2 MS Excel Spreadsheet - 5.0 MB - MD5: 8012ce30b4ca5df89866f219664916cc Code Application (runs in MS.Excel)
R code for volume calculation using CloudCompare Sep 18, 2020 - UMR LISAH Vinatier Fabrice; Feurer Denis; Coulouma Guillaume, 2020, "R code for volume calculation using CloudCompare", https://doi.org/10.5281/zenodo.4036423, Zenodo Dense 3D point clouds resulting from SfM acquisitions were processed in several steps consisting of a combination of calls to CloudCompare 2.10.1 functions using R software and raster processes using the ‘raster’ R library. A sample dataset is available at the following URL (http... This Dataset is harvested from our partners. Clicking the link will take you directly to the archival source of the data.
JEAI GRAB(University of Abomey-Calavi and IRD) Sep 16, 2020Benin JEAI Genetic Resources & Agronomic Biodiversity in Benin (GRAB)
Benin Sep 16, 2020Partnerships
UMR EGCE(Paris-Saclay University, CNRS, IRD) Sep 11, 2020 EGCE laboratory (Evolution, Genomes, Behavior and Ecology) EGCE focuses on evolution and biodiversity. It adopts a multidisciplinary approach involving genomics, genetics and ecology at various levels, from genomes to species and even to communities. Different aspects of evolutio...
Informal waste collection system Sep 7, 2020Vietnam
Divergence_time_beast.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 852 B - MD5: 3da14ba7c072d5b354c04f98edba3cc8 Code Bash script used to infer the chronogram with BEAST software. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
Divergence_time_beast.xml Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum XML - 1.1 MB - MD5: 123ff8c0bc59283a8a6364798a24e81c Data Input file used in the script Divergence_time_beast.sh which uses BEAST software to infer the chronogram (divergence time estimates). This file was created with BEAUti program of BEAST. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
jmodeltest.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 826 B - MD5: 083b0144bee47b1ffbc55d8aa77b23e6 Code Bash script used to run JmodelTest2 to infer the best substitution model. The results generated by JmodelTest2 were subsequently used in the phylogenetic reconstruction, the skyline plot and the inference of the chronogram. More information is provided in Ben Chehida et al. (2020...

Racine 2.2

Sep 18, 2020 - CERES Team

Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2", https://doi.org/10.23708/CKRDBW, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF]

RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...

Racine2_2_V10.xlsm

Sep 18, 2020 - Racine 2.2

MS Excel Spreadsheet - 5.0 MB -

Code

Application (runs in MS.Excel)

R code for volume calculation using CloudCompare

Sep 18, 2020 - UMR LISAH

Vinatier Fabrice; Feurer Denis; Coulouma Guillaume, 2020, "R code for volume calculation using CloudCompare", https://doi.org/10.5281/zenodo.4036423, Zenodo

Dense 3D point clouds resulting from SfM acquisitions were processed in several steps consisting of a combination of calls to CloudCompare 2.10.1 functions using R software and raster processes using the ‘raster’ R library. A sample dataset is available at the following URL (http...

This Dataset is harvested from our partners. Clicking the link will take you directly to the archival source of the data.

JEAI GRAB(University of Abomey-Calavi and IRD)

Sep 16, 2020Benin

JEAI Genetic Resources & Agronomic Biodiversity in Benin (GRAB)

Benin

Sep 16, 2020Partnerships

UMR EGCE(Paris-Saclay University, CNRS, IRD)

Sep 11, 2020

EGCE laboratory (Evolution, Genomes, Behavior and Ecology) EGCE focuses on evolution and biodiversity. It adopts a multidisciplinary approach involving genomics, genetics and ecology at various levels, from genomes to species and even to communities. Different aspects of evolutio...

Informal waste collection system

Sep 7, 2020Vietnam

Divergence_time_beast.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 852 B -

Code

Bash script used to infer the chronogram with BEAST software. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

Divergence_time_beast.xml

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

XML - 1.1 MB -

Data

Input file used in the script Divergence_time_beast.sh which uses BEAST software to infer the chronogram (divergence time estimates). This file was created with BEAUti program of BEAST. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

jmodeltest.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 826 B -

Code

Bash script used to run JmodelTest2 to infer the best substitution model. The results generated by JmodelTest2 were subsequently used in the phylogenetic reconstruction, the skyline plot and the inference of the chronogram. More information is provided in Ben Chehida et al. (2020...

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