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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

Comment publier un jeu de données (dataset) dans DataSuds ?
→ Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection. → Mode d'emploi

UMI TransVIHMI

UMR CEREGE

UMR ESPACE-DEV

UMR PHIM

UMR DIADE

Base cartographique Sphaera

Partnerships

UMR iEES-Paris

UMR AMAP

UMR HydroSciences Montpellier

UMR Entropie

UMR MIO

UMR MoISA

UMR MIVEGEC

UMR GET

UMI SOURCE

UMR EGCE

UMR Eco&Sols

UMR INTERTRYP

UMR QualiSud

UMR LEMAR

UMR LEDa

UMR PHARMADEV

UMR CBGP

UMR PALOC

UMR MERIT

UMI UMMISCO

UMR SENS

UMR Ceped

UMR IGE

UMR LMV

UMR MARBEC

UMR G-EAU

UMR Geoazur

LMI CARIBACT

Mission pour la Science Ouverte (MSO)

LMI PathoBios

Data collected as part of M-TROPICS based research projects

Rain Cell projects

AMMA-CATCH associated projects

Paddle project

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3,921 to 3,930 of 7,888 Results

Porpoises_NA_Microsatellite_data_cleaned.tab Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications Tabular Data - 100.6 KB - 25 Variables, 925 Observations - UNF:6:j1jcc4A1Rs+FEedPbYzYIQ== Data File providing the identifier, geographical group, local sub-group, latitude, longitude, and the genotypes at the 10 microsatellites for 925 harbor porpoises (i.e. individuals with ≤40% of missing data). This dataset was used in all the analyses but the sPCA. The sPCA analysis us...
Porpoises_NA_Unique_haplotypes.fasta Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications Unknown - 469.4 KB - MD5: a82b8e6724f8492893f54daf714c9543 Data Fasta alignment of 111 unique mitochondrial DNA haplotypes (110 harbor porpoises and 1 Dall's porpoise). This alignment contains five mitochondrial coding regions (CytB, ATP6, ATP8, ND5, and COXI). These unique sequences were used to infer the phylogenetic tree. For further detai...
RainCell_Bamako20190516_qmax_event.txt Mar 10, 2021 - Simulated peak flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 107.1 MB - MD5: c7877b143340dab9f06f17803716c20d Data Simulated peakflow (liters per second). Raster file in ASCII ESRI format ; missing data coded as -9999
AMMA-CATCH associated projects(IRD, CNRS-INSU, OSUG, OMP, OREME) Mar 10, 2021 Projects associated to the AMMA-CATCH National Observation Service (SNO) "African Monsoon Multidisciplinary Analysis - Coupling the Tropical Atmosphere and the Hydrological Cycle" Access to the main database: http://bd.amma-catch.org
RainCell_Bamako20190516_overbank.txt Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 106.6 MB - MD5: 915ca27b5fa2333d7749ff66ce5f8e92 Data Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999
RainCell_Bamako20190516_Map_REX.pdf Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali Adobe PDF - 2.8 MB - MD5: 48e52c57dee79a47a9e98f67e5033f41 Data Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).
PHIM_ xisRNA_ancillaryInputData.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 5.0 MB - MD5: 8f147c6903729a14cfa76cb3237d17c6 Data Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.
PHIM_ xisRNA_coveragePlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 31.9 MB - MD5: 72245fe84113b55b54efa77c44c87308 Plot Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.
PHIM_ xisRNA_domainsPlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 944.3 KB - MD5: bd5265d4a84d85a6bc13f363e8f5cb1f Plot Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_iprScan.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 1.8 MB - MD5: 5350dacb2c14b070cd1cac19066692b4 Data Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

Porpoises_NA_Microsatellite_data_cleaned.tab

Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Tabular Data - 100.6 KB - 25 Variables, 925 Observations -

Data

File providing the identifier, geographical group, local sub-group, latitude, longitude, and the genotypes at the 10 microsatellites for 925 harbor porpoises (i.e. individuals with ≤40% of missing data). This dataset was used in all the analyses but the sPCA. The sPCA analysis us...

Porpoises_NA_Unique_haplotypes.fasta

Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Unknown - 469.4 KB -

Data

Fasta alignment of 111 unique mitochondrial DNA haplotypes (110 harbor porpoises and 1 Dall's porpoise). This alignment contains five mitochondrial coding regions (CytB, ATP6, ATP8, ND5, and COXI). These unique sequences were used to infer the phylogenetic tree. For further detai...

RainCell_Bamako20190516_qmax_event.txt

Mar 10, 2021 - Simulated peak flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 107.1 MB -

Data

Simulated peakflow (liters per second). Raster file in ASCII ESRI format ; missing data coded as -9999

AMMA-CATCH associated projects(IRD, CNRS-INSU, OSUG, OMP, OREME)

Mar 10, 2021

Projects associated to the AMMA-CATCH National Observation Service (SNO) "African Monsoon Multidisciplinary Analysis - Coupling the Tropical Atmosphere and the Hydrological Cycle" Access to the main database: http://bd.amma-catch.org

RainCell_Bamako20190516_overbank.txt

Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 106.6 MB -

Data

Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999

RainCell_Bamako20190516_Map_REX.pdf

Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali

Adobe PDF - 2.8 MB -

Data

Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).

PHIM_ xisRNA_ancillaryInputData.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 5.0 MB -

Data

Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.

PHIM_ xisRNA_coveragePlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 31.9 MB -

Plot

Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.

PHIM_ xisRNA_domainsPlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 944.3 KB -

Plot

Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_iprScan.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 1.8 MB -

Data

Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

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